What are the best hotels in Mission Bay?

Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Paradise Point Resort & Spa, Bahia Resort Hotel, and Catamaran Resort Hotel and Spa are all recommended on KAYAK.

Which hotels in Mission Bay are romantic?

If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Wayfarer San Diego, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.

Hotels in Mission Bay (San Diego) from R1 113/night

Recommended by KAYAK

Best hotels in Mission Bay (San Diego)

These are the best prices for 12-19 jun..

The Wayfarer San Diego

3,0 km from Mission Bay, San Diego, United States

8.9Very Good(1902)

Free Wi-Fi

Pool

Air conditioning

R7 734+

Check availability

The Dana on Mission Bay

1,7 km from Mission Bay, San Diego, United States

8.3Very Good(1867)

Pool

Pet-friendly

Air conditioning

R5 285+

Check availability

Catamaran Resort Hotel and Spa

2,9 km from Mission Bay, San Diego, United States

8.3Very Good(686)

Free Wi-Fi

Pool

Pet-friendly

Air conditioning

R6 787+

Check availability

Paradise Point Resort & Spa

1,2 km from Mission Bay, San Diego, United States

8.1Very Good(1998)

Free Wi-Fi

Pool

Pet-friendly

Air conditioning

R8 189+

Check availability

Hyatt Regency Mission Bay Spa And Marina

1,9 km from Mission Bay, San Diego, United States

7.7Good(2762)

Free Wi-Fi

Pool

Pet-friendly

Air conditioning

R6 529+

Check availability

Bahia Resort Hotel

2,0 km from Mission Bay, San Diego, United States

8.1Very Good(1661)

Parking

Free Wi-Fi

Pool

Pet-friendly

R6 701+

Check availability

San Diego Mission Bay Resort

1,5 km from Mission Bay, San Diego, United States

7.8Good(468)

Free Wi-Fi

Pool

Pet-friendly

Air conditioning

R6 466+

Check availability

The Boardwalk Hotel

2,4 km from Mission Bay, San Diego, United States

8.8Very Good(61)

Free Wi-Fi

Air conditioning

R6 951+

Check availability

Ith Mission Beach Backpacker Hostel

2,4 km from Mission Bay, San Diego, United States

9.1Wonderful(257)

Free Wi-Fi

R3 435+

Check availability

Mission Beach Townhome Getaway

2,5 km from Mission Bay, San Diego, United States

9.6Wonderful(34)

House

Parking

Free Wi-Fi

Air conditioning

R15 384+

Check availability

San Diego's Tuscan Villa Mansion On The Beach

2,6 km from Mission Bay, San Diego, United States

9.1Wonderful(83)

House

Free Wi-Fi

Air conditioning

R24 910+

Check availability

Mission Beach Bungalow: Steps to Ocean, Parking!

2,3 km from Mission Bay, San Diego, United States

9.7Wonderful(22)

Apartment

Parking

Free Wi-Fi

Air conditioning

R9 646+

Check availability

Paradise on Mission Bay

2,7 km from Mission Bay, San Diego, United States

9.8Wonderful(31)

Condo

Free Wi-Fi

R9 566+

Check availability

2 Bedroom Townhome 2 Mins. to the Beach

2,4 km from Mission Bay, San Diego, United States

Free Wi-Fi

2,4 km from Mission Bay, San Diego, United States

10Wonderful(1)

Apartment

Parking

Free Wi-Fi

Pet-friendly

R7 762+

Check availability

Ocean Front Beach Mission Penthouse!

2,6 km from Mission Bay, San Diego, United States

9.8Wonderful(19)

Condo

R12 141+

Check availability

Heart of MB, steps to the beach, garage and bikes

2,5 km from Mission Bay, San Diego, United States

8.5Very Good(39)

Condo

R7 739+

Check availability

Beautiful Apartment 5 Minutes From The Ocean

2,5 km from Mission Bay, San Diego, United States

8.6Very Good(3)

Apartment

R11 252+

Check availability

Highly Rated Best Beach! 3bd 2ba Ac Luxu

2,5 km from Mission Bay, San Diego, United States

9.3Wonderful(49)

House

Parking

Free Wi-Fi

Pool

Air conditioning

R14 659+

Check availability

Bay View II by AvantStay Ocean View Mission Beach Home on the Sand

2,4 km from Mission Bay, San Diego, United States

9.1Wonderful(29)

Apartment

Parking

Free Wi-Fi

R9 713+

Check availability

Booking Insights

KAYAK’s insights for hotels in Mission Bay

Discover seasonal trends, ideal booking windows, and other data-driven tips to plan your stay in Mission Bay with confidence.

Which month has the cheapest hotel rates in Mission Bay?

Hotels are cheapest in Mission Bay in February, with average rates of R4 662/night. In comparison, July is the most expensive month, with prices at R7 591/night.

What is the cheapest day of the week to book a hotel in Mission Bay?

Monday offers the lowest rates in Mission Bay, with an average nightly price of R4 245/night. The highest prices are found on Friday, with average rates at R6 856/night.

How much is a hotel in Mission Bay for tonight?

The best deal for a 3-star hotel room in Mission Bay found by KAYAK users in the last 3 days was R2 796, while a 4-star hotel the lowest price was R3 179. The cheapest room found overall was for R2 796.

How much is a hotel in Mission Bay for this weekend?

The cheapest hotel room in Mission Bay for the upcoming weekend found on KAYAK in the last 3 days was for R5 611 per night. For the same dates, 3-star hotel rooms have been found for as low as R5 611 per night and 4-star hotel rooms from R5 982 per night.

Find deals

4 stars and above

3 stars

2 stars and below

Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 3 days.

What are the best hotels in Mission Bay?
Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Paradise Point Resort & Spa, Bahia Resort Hotel, and Catamaran Resort Hotel and Spa are all recommended on KAYAK.
Which hotels in Mission Bay are romantic?
If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Wayfarer San Diego, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.