Hotels in Mission Bay, San Diego

KAYAK searches hundreds of travel sites at once for hotels in Mission Bay

Here is why travellers choose KAYAK

Free to useThere are no hidden charges or fees

Filter your dealsFilter by free cancellation, free breakfast and more.

Millions of reviewsCheck ratings based on millions of real guest reviews.

Recommended by KAYAK
Booking Insights
Recommended by KAYAK

Best hotels in Mission Bay (San Diego)

The Wayfarer San Diego - San Diego - Bedroom
The Wayfarer San Diego
3,0 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Air conditioning
Catamaran Resort Hotel and Spa - San Diego - Bedroom
Catamaran Resort Hotel and Spa
2,8 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
2,0 km from Mission Bay, San Diego, United States
Parking
Free Wi-Fi
Pool
Pet-friendly
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
1,7 km from Mission Bay, San Diego, United States
Pool
Pet-friendly
Air conditioning
Hyatt Regency Mission Bay Spa And Marina - San Diego - Building
Hyatt Regency Mission Bay Spa And Marina
1,9 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
Paradise Point Resort & Spa - San Diego - Restaurant
Paradise Point Resort & Spa
1,2 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
San Diego Mission Bay Resort - San Diego - Restaurant
San Diego Mission Bay Resort
1,5 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
The Boardwalk Hotel - San Diego - Living room
The Boardwalk Hotel
2,4 km from Mission Bay, San Diego, United States
Free Wi-Fi
Air conditioning
Ith San Diego Mission Beach Backpacker Hostel - San Diego - Bedroom
Ith San Diego Mission Beach Backpacker Hostel
2,4 km from Mission Bay, San Diego, United States
Free Wi-Fi
Beautiful Spacious Beach House Steps Away from the Ocean and Belmont Park - San Diego - Bedroom
Free Wi-Fi
Air conditioning
Luna Azul, cozy condo only steps to Mission Beach! Free Internet - San Diego - Living room
Luna Azul, cozy condo only steps to Mission Beach! Free Internet
2,4 km from Mission Bay, San Diego, United States
Parking
Free Wi-Fi
Ocean Front on the Mission Beach Boardwalk! - San Diego - Bedroom
Ocean Front on the Mission Beach Boardwalk!
2,6 km from Mission Bay, San Diego, United States
Free Wi-Fi
Bay View II by AvantStay Ocean View Mission Beach Home on the Sand - San Diego - Balcony
Bay View II by AvantStay Ocean View Mission Beach Home on the Sand
2,4 km from Mission Bay, San Diego, United States
Parking
Free Wi-Fi
Fall fun at Mickey's Bungalow! By Beach+Bay+Pets - San Diego - Beach
Fall fun at Mickey's Bungalow! By Beach+Bay+Pets
2,3 km from Mission Bay, San Diego, United States
Air conditioning
2 Bedroom Townhome 2 Mins. to the Beach - San Diego - Bedroom
2 Bedroom Townhome 2 Mins. to the Beach
2,4 km from Mission Bay, San Diego, United States
Free Wi-Fi
Rockaway Cottage - San Diego - Living room
Rockaway Cottage
2,5 km from Mission Bay, San Diego, United States
Free Wi-Fi
Beautiful Suite Steps to the Sand and Belmont Park - San Diego - Living room
Beautiful Suite Steps to the Sand and Belmont Park
2,3 km from Mission Bay, San Diego, United States
Free Wi-Fi
200-Surf Stars Penthouse - San Diego
200-Surf Stars Penthouse
2,9 km from Mission Bay, San Diego, United States
Parking
Free Wi-Fi
Pet-friendly
Air conditioning
Booking Insights

KAYAK’s insights for hotels in Mission Bay

Discover seasonal trends, ideal booking windows, and other data-driven tips to plan your stay in Mission Bay with confidence.

Which month has the cheapest hotel rates in Mission Bay?

Hotels are cheapest in Mission Bay in December, with average rates of R3 355. In comparison, August is the most expensive month, with prices at R8 129.

What is the cheapest day of the week to book a hotel in Mission Bay?

Sunday offers the lowest rates in Mission Bay, with an average nightly price of R3 232. The highest prices are found on Thursday, with average rates at R3 701.

How much is a hotel in Mission Bay for tonight?

The best deal for a 3-star hotel room in Mission Bay found by KAYAK users in the last 3 days was R2 128, while a 4-star hotel the lowest price was R2 533. The cheapest room found overall was for R2 128.

How much is a hotel in Mission Bay for this weekend?

The cheapest hotel room in Mission Bay for the upcoming weekend found on KAYAK in the last 3 days was for R2 234 per night. For the same dates, 3-star hotel rooms have been found for as low as R2 253 per night and 4-star hotel rooms from R2 459 per night.

How much is a Mission Bay hotel?

Here are our most popular & best value hotels

Top tips for finding a hotel deal in Mission Bay

  • Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 3 days.

FAQs when booking a hotel in Mission Bay

  • What are the best hotels in Mission Bay?

    Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Paradise Point Resort & Spa, Bahia Resort Hotel, and Hyatt Regency Mission Bay Spa And Marina are all recommended on KAYAK.

  • Which hotels in Mission Bay are romantic?

    If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Wayfarer San Diego, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.

Where to stay in Mission Bay?

Our map will help you find the perfect hotel in Mission Bay, San Diego by showing you the exact location of each hotel.

What Mission Bay hotel guests are talking about

Show all

Popular topics

Hotels about topic

Show all
Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
2,0 km from Mission Bay, San Diego, United States
Parking
Free Wi-Fi
Pool
Pet-friendly
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
1,7 km from Mission Bay, San Diego, United States
Pool
Pet-friendly
Air conditioning
The Wayfarer San Diego - San Diego - Bedroom
The Wayfarer San Diego
3,0 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Air conditioning
Hyatt Regency Mission Bay Spa And Marina - San Diego - Building
Hyatt Regency Mission Bay Spa And Marina
1,9 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
Catamaran Resort Hotel and Spa - San Diego - Bedroom
Catamaran Resort Hotel and Spa
2,8 km from Mission Bay, San Diego, United States
Free Wi-Fi
Pool
Pet-friendly
Air conditioning

Everything you need to know for your stay in San Diego