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Hotels in Mission Bay, San Diego

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Best hotels in Mission Bay (San Diego)

Most recommended Mission Bay hotels

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Paradise Point Resort & Spa - San Diego - Bedroom
Paradise Point Resort & Spa
Mission Bay
8.1Very Good(1863)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
R6 867+
Check availability
Catamaran Resort Hotel and Spa - San Diego - Patio
Catamaran Resort Hotel and Spa
Mission Bay
8.2Very Good(617)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
R6 831+
Check availability
Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
Mission Bay
8.2Very Good(1447)
Parking
Free Wi-Fi
Pool
Pet-friendly
R6 307+
Check availability
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
Mission Bay
8.2Very Good(1609)
Pool
Pet-friendly
Air conditioning
R5 747+
Check availability
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
Mission Bay
7.8Good(2559)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
R7 288+
Check availability
The Wayfarer San Diego - San Diego - Beach
The Wayfarer San Diego
Mission Bay
8.6Very Good(1625)
Free Wi-Fi
Pool
Air conditioning
R6 764+
Check availability
Beach House Steps To Sand Huge Patio Free Parking - San Diego - Kitchen
Beach House Steps To Sand Huge Patio Free Parking
Mission Bay
Free Wi-Fi
Air conditioning
R6 395+
Check availability
2 Level Townhouse + Sky Deck + Steps to Ocean - San Diego - Outdoor view
2 Level Townhouse + Sky Deck + Steps to Ocean
Mission Bay
9.3Wonderful(29)
Free Wi-Fi
R13 807+
Check availability
Newer Unit! -- Ocean Front with Amazing Ocean Views! - San Diego - Kitchen
Newer Unit! -- Ocean Front with Amazing Ocean Views!
Mission Bay
Free Wi-Fi
R6 321+
Check availability
The Boardwalk Hotel - San Diego - Balcony
The Boardwalk Hotel
Mission Bay
8.8Very Good(36)
Free Wi-Fi
Air conditioning
R8 238+
Check availability
Belmont Shores - San Diego - Living room
Belmont Shores
Mission Bay
Parking
Free Wi-Fi
Air conditioning
R19 364+
Check availability
B5089 Seascape Beach House - San Diego - Outdoor view
B5089 Seascape Beach House
Mission Bay
9.7Wonderful(43)
Parking
Free Wi-Fi
R14 477+
Check availability
Steps To The Bay And The Ocean!! - San Diego - Living room
Steps To The Bay And The Ocean!!
Mission Bay
Free Wi-Fi
R4 887+
Check availability
Modern Beach Studio Condo - San Diego - Beach
Modern Beach Studio Condo
Mission Bay
Free Wi-Fi
Air conditioning
R5 079+
Check availability
Ocean Front Patio, Seconds to Beach/Ocean, Parking - San Diego - Patio
Ocean Front Patio, Seconds to Beach/Ocean, Parking
Mission Bay
R7 693+
Check availability
Modern Retreat Steps to the Beach! - San Diego - Kitchen
Modern Retreat Steps to the Beach!
Mission Bay
Air conditioning
R7 859+
Check availability
Steps To The Water On Both Sides!! - San Diego - Bedroom
Steps To The Water On Both Sides!!
Mission Bay
R4 200+
Check availability
Oceanfront Beauty w/ Expansive Views & Private Hot Tub - San Diego
Oceanfront Beauty w/ Expansive Views & Private Hot Tub
Mission Bay
Air conditioning
R33 597+
Check availability
Bright Dog-Friendly Condo W/ Access To Everything Mission Beach Has To Offer! - San Diego
Bright Dog-Friendly Condo W/ Access To Everything Mission Beach Has To Offer!
Mission Bay
Air conditioning
R4 779+
Check availability
Manhattan Shores 1C - San Diego
Manhattan Shores 1C
Mission Bay
7.9Good(1)
Parking
Free Wi-Fi
Pet-friendly
R9 004+
Check availability
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KAYAK’s insights for hotels in Mission Bay

Discover seasonal trends, ideal booking windows, and other data-driven tips to plan your stay in Mission Bay with confidence.

Which month has the cheapest hotel rates in Mission Bay?

Hotels are cheapest in Mission Bay in January, with average rates of R72 671. In comparison, December is the most expensive month, with prices at R343 253.

What is the cheapest day of the week to book a hotel in Mission Bay?

Sunday offers the lowest rates in Mission Bay, with an average nightly price of R85 023. The highest prices are found on Friday, with average rates at R96 894.

How much is a hotel in Mission Bay for tonight?

The best deal for a 3-star hotel room in Mission Bay found by KAYAK users in the last 3 days was R2 632, while a 4-star hotel the lowest price was R3 897. The cheapest room found overall was for R2 632.

How much is a hotel in Mission Bay for this weekend?

The cheapest hotel room in Mission Bay for the upcoming weekend found on KAYAK in the last 3 days was for R4 110 per night. For the same dates, 3-star hotel rooms have been found for as low as R4 877 per night and 4-star hotel rooms from R4 110 per night.
Find deals

How much is a Mission Bay hotel?

Here are our most popular & best value hotels

2 stars and below

3 stars

4 stars and above

Good to know

Low season

January

High season

December
Cheapest month to stay with an average 39% drop in price.
Most expensive month to stay with an average 190% rise in price.

Top tips for finding a hotel deal in Mission Bay

  • If you’re looking for a cheap hotel in Mission Bay, you should consider going during the low season. You’ll generally find lower-priced hotels in Mission Bay in May and June.
  • Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 3 days.

FAQs when booking a hotel in Mission Bay

  • What are the best hotels in Mission Bay?

    Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then The Wayfarer San Diego, Paradise Point Resort & Spa, and Hyatt Regency Mission Bay Spa And Marina are all recommended on KAYAK.

  • Which hotels in Mission Bay are romantic?

    If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Wayfarer San Diego, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.

Where to stay in Mission Bay?

Our map will help you find the perfect hotel in Mission Bay, San Diego by showing you the exact location of each hotel.

What Mission Bay hotel guests are talking about

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Hotels about topic

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Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
Mission Bay
8.2Very Good(1447)
Parking
Free Wi-Fi
Pool
Pet-friendly
R6 307+
Check availability
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
Mission Bay
8.2Very Good(1609)
Pool
Pet-friendly
Air conditioning
R5 747+
Check availability
The Wayfarer San Diego - San Diego - Beach
The Wayfarer San Diego
Mission Bay
8.6Very Good(1625)
Free Wi-Fi
Pool
Air conditioning
R6 764+
Check availability
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
Mission Bay
7.8Good(2559)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
R7 288+
Check availability
Catamaran Resort Hotel and Spa - San Diego - Patio
Catamaran Resort Hotel and Spa
Mission Bay
8.2Very Good(617)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
R6 831+
Check availability

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Everything you need to know for your stay in San Diego

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